Enterococcus faecalis
Microbiome CRO Services

Creative Biolabs provides comprehensive Enterococcus faecalis microbiome research services to academic institutes, biotech startups, and pharmaceutical R&D teams. Using advanced microbial isolation, in vitro screening, and host-interaction assays, we help decipher the roles of E. faecalis in the gut microbiome and accelerate the development of microbiome-based solutions.

Renowned Microbiome CRO Expertis

Creative Biolabs is a globally recognized CRO trusted by industry leaders for high-quality microbiome R&D support.

Fig. 1. Abbvie logo (Creative Biolabs Authorized) Fig. 2. Sanofi logo-(Creative Biolabs Authorized) Fig. 3. CSH logo (Creative Biolabs Authorized) Fig. 4. Novartis logo (Creative Biolabs Authorized) Fig. 5. Southern research logo (Creative Biolabs Authorized)

Why Choose E. faecalis Microbiome Services?

E. faecalis is a Gram-positive commensal bacterium representing about 1% of the gut microbiota. Although modest in abundance, it plays significant roles: some strains produce bacteriocins and show probiotic potential, while others carry virulence factors and multidrug resistance, acting as opportunistic pathogens. This duality highlights the importance of comprehensive evaluation. Creative Biolabs' E. faecalis microbiome CRO service provides end-to-end solutions, including isolation, functional characterization, host-interaction studies, and biosafety assessments. Our expertise enables clients to de-risk E. faecalis research, accelerate discovery, and gain actionable insights into its microbiome functions.

Fig. 6 Enterococcus faecalis bacteria (Creative Biolabs Authorized)

Comprehensive E. faecalis Microbiome Services

Microbial Isolation and Screening Services

We employ optimized culturing techniques to isolate E. faecalis from complex samples (such as fecal matter or environmental swabs) and obtain pure colonies. Our team then performs initial screening of isolates, including Gram staining and genotypic confirmation, to verify species identity. We also evaluate colony morphology and basic phenotypic traits to select robust E. faecalis strains for downstream analyses, providing a solid foundation of high-quality isolates for your research.

Antimicrobial Susceptibility Testing

Creative Biolabs offers comprehensive antibiotic susceptibility profiling for E. faecalis strains. Using standardized assays (e.g. broth microdilution and disk diffusion), we determine the minimum inhibitory concentrations of various antibiotics and chart the resistance/susceptibility profile of each strain. This is especially important given the rise of vancomycin-resistant E. faecalis isolates in recent years. Our detailed reports identify any antibiotic resistance genes or phenotypes present, helping researchers understand safety concerns and informing the development of new antimicrobial strategies.

Functional and MoA Screening

We conduct extensive functional assays to uncover the biochemical activities and potential mechanisms of action (MoA) of E. faecalis strains. These screenings include tests for metabolic capabilitiesand beneficial functions like bile salt tolerance, short-chain fatty acid production, or bacteriocin secretion. We also examine antagonistic activity against pathogens and other microbiota members. By elucidating E. faecalis' functional attributes, our service helps pinpoint how a strain exerts its effects within the microbiome and provides clues to its probiotic potential or pathogenic mechanisms.

Host-Microbe Interaction Tests

Understanding how E. faecalis interacts with host tissues is key to gauging its safety and efficacy. We offer in vitro host-microbe interaction assays, including adhesion studies with intestinal epithelial cell lines and gut barrier integrity tests. For example, we can quantify E. faecalis' ability to adhere to mucosal surfaces or its effect on tightening or loosening of epithelial junctions. We also assess cross-talk with host signaling pathways by measuring changes in epithelial cell responses upon co-culture.

In Vitro Tests of Immune System Modulation

Our scientists evaluate the immunomodulatory properties of E. faecalis using specialized cell-based assays. We incubate live E. faecalis with immune cells such as human peripheral blood mononuclear cells or macrophage/DC cultures. By monitoring cytokine production (e.g. levels of IL-10, IL-12, TNF-α) and immune cell activation markers, we determine whether a given E. faecalis strain induces pro-inflammatory or anti-inflammatory responses. These in vitro immune modulation tests are crucial for identifying strains that could be beneficial versus those that trigger undesirable immune reactions.

Microbial Fermentation Services

Creative Biolabs provides fermentation process development tailored to E. faecalis. Thanks to their tolerance to a range of pH and temperature condition, E. faecalis strains can be cultured at scale efficiently. We optimize growth media and bioreactor parameters to maximize biomass and maintain strain viability and functionality. Whether you require small pilot batches or larger quantities, our fermentation experts ensure a consistent, high-yield production of E. faecalis. This service is invaluable for generating sufficient material for animal studies, formulation trials, or further product development.

Microbial Formulation Service

After culturing the bacteria, we also support the formulation of E. faecalis as a stable product for research use. Our formulation services include concentration and purification of the cultured bacteria, followed by processes such as lyophilization (freeze-drying) to create a shelf-stable powder. We carefully select cryoprotectants and excipients that preserve cell viability and activity during storage. Additionally, we can formulate E. faecalis into capsules, suspensions, or other delivery formats as needed for your experimental design.

Biological Safety Test Services

We offer a battery of safety evaluations for E. faecalis strains to ensure they are suitable for research. Our safety tests include checking for known virulence factors and toxin production, assessing hemolytic activity on blood agar, and measuring undesirable metabolites like biogenic amines. We also confirm the absence of transferable antibiotic resistance genes to avoid propagating dangerous traits. For example, a strain intended as a probiotic candidate should show no hemolysis, no toxin gene sequences, and be susceptible to standard antibiotics. By thoroughly screening each strain, Creative Biolabs helps you meet regulatory guidelines and ensures E. faecalis is handled with appropriate biosafety precautions.

Workflow for E. faecalis Services

1

Project Consultation

Define research objectives, select assays, and design tailored E. faecalis study protocols.

2

Sample Isolation

Process samples, selectively culture E. faecalis, and confirm identity using molecular characterization.

3

Strain Profiling

Conduct antimicrobial susceptibility, metabolic analysis, and functional screening for detailed strain characterization.

4

Interaction Studies

Evaluate adhesion, barrier integrity, and immune modulation in host-microbe interaction assays.

5

Fermentation & Formulation

Scale up biomass production, optimize conditions, and prepare stable research-grade formulations.

6

Data Reporting

Analyze experimental results, generate detailed reports, and provide expert scientific interpretation support.

Advantages of Our E. faecalis CRO Services

Specialized Expertise

Experienced microbiome scientists ensure precise E. faecalis research design, execution, and data interpretation for reliable outcomes.

Comprehensive Capabilities

From isolation to safety assessment, we provide complete, integrated solutions covering every stage of E. faecalis research.

Advanced Technologies

Cutting-edge genomic, proteomic, and metabolomic platforms enable high-resolution characterization of E. faecalis properties and microbiome interactions.

Quality Assurance

Stringent protocols and safety evaluations guarantee consistent data quality, reliability, and regulatory compliance throughout every project stage.

Customizable Services

Flexible workflows allow tailored assay selection and protocol modifications to precisely address unique research requirements.

Collaborative Support

Dedicated experts provide ongoing communication, technical consultation, and project updates to strengthen client partnerships and scientific progress.

Applications in E. faecalis Research

Gut Microbiome Studies

E. faecalis serves as a model to investigate microbial ecology, host interactions, and community dynamics, providing insights into microbiome balance, dysbiosis, and overall gastrointestinal health outcomes.

Probiotic Candidate Evaluation

Certain E. faecalis strains show functional benefits such as bacteriocin production or immune modulation, supporting their evaluation as potential probiotic candidates under rigorous laboratory conditions for research purposes.

Antimicrobial Resistance Research

With rising vancomycin-resistant Enterococci, E. faecalis enables detailed investigations into resistance mechanisms, testing of novel antimicrobials, and development of effective control strategies against multidrug-resistant bacterial strains.

Inflammatory Bowel Disease Models

Higher abundance of E. faecalis in IBD patients highlights its role in gut inflammation, supporting mechanistic studies into epithelial barrier disruption and immune dysregulation in disease.

Nosocomial Infection Models

As an opportunistic pathogen, E. faecalis is studied for virulence factors and biofilm formation, advancing infection biology understanding and strategies for hospital-associated infection prevention and management.

Immune Modulation Analysis

E. faecalis strains influence immune responses, enabling research on cytokine production, T-cell regulation, and innate immunity to reveal host tolerance versus inflammation mechanisms in microbial interactions.

Fig. 7 Sample submission form (Creative Biolabs Original)

Partner with our experts to advance your E. faecalis research—share samples and objectives to launch a customized study plan.

E. faecalis Related Products

To further support E. faecalis projects, Creative Biolabs also provides a range of related research products:

Product Name Catalog No. Target Product Overview Size Price
Enterococcus faecalis LBGF-0722-GF21 Enterococcus Gram-positive commensal bacterium inhabiting the gastrointestinal tracts of humans. It is found in healthy humans and can be used as a probiotic.
Heat inactivated Enterococcus faecalis LBGF-0224-GF45 Inactivated Enterococcus Heat-inactivated at 65 °C for 30 min; frozen format; shipping on dry ice.
Enterococcus faecalis, Rabbit faeces LBGF-0323-GF1 Enterococcus Gram-positive, commensal bacterium inhabiting the gastrointestinal tracts of humans. It is found in healthy humans and can be used as a probiotic.
Enterococcus faecalis DNA Standard LBGF-0125-GF3 Enterococcus DNA Standard Microbial DNA standard from Enterococcus faecalis.
Inactivated Enterococcus faecalis, 1 mL LBGF-0125-GF147 Inactivated Enterococcus Enterococcus faecalis has been inactivated. 1 mL
Enterococcus faecalis DNA Standard; 100 μL/vial LBGF-0125-GF43 Enterococcus DNA Standard Be used for quantitative research and analysis, assay development, verification, and validation, and laboratory quality control. 100 µL/vial; 5

FAQs

We perform rigorous identification of isolates using a combination of methods. After selective culturing, we verify E. faecalis via Gram-staining (Gram-positive cocci) and biochemical tests, and we confirm species identity by 16S rRNA gene sequencing or MALDI-TOF mass spectrometry. This polyphasic approach ensures the accuracy of our strain identification.

Absolutely. We tailor each project to the client’s goals. Researchers can select specific assays from our service portfolio or request custom protocol adjustments. Our experts collaborate closely with you to design a workflow that addresses your particular scientific questions, whether it’s focusing on a certain virulence factor, testing a novel compound, or any other specialized requirement.

Our E. faecalis service package includes comprehensive safety testing. We screen strains for harmful attributes such as hemolysin production, gelatinase activity, and toxin genes. We also perform antibiotic susceptibility tests and check for known antibiotic resistance genes. If a strain exhibits any unsafe characteristics (for example, high virulence or multi-drug resistance), we flag it in our report. These evaluations ensure that only strains suitable for research progress through development.

No – our services are for research use only. Creative Biolabs specializes in preclinical research support. We do not provide clinical treatments or diagnostics. All E. faecalis studies and products we handle are intended to advance scientific understanding or aid in the R&D of future therapeutics, but they are not themselves clinical or therapeutic offerings.

References

  1. Dubin, Krista, and Eric G. Pamer. "Enterococci and their interactions with the intestinal microbiome." Microbiology spectrum 5.6 (2017): 10-1128. https://doi.org/10.1128/microbiolspec.bad-0014-2016
  2. Wang, Yue, et al. "Enterococci for human health: a friend or foe?." Microbial Pathogenesis (2025): 107381. https://doi.org/10.1016/j.micpath.2025.107381
  3. Han, Kwon Il, et al. "Probiotic and Postbiotic Potentials of Enterococcus faecalis EF-2001: A Safety Assessment." Pharmaceuticals 17.10 (2024): 1383. https://doi.org/10.3390/ph17101383
  4. Lengfelder, Isabella, et al. "Complex bacterial consortia reprogram the colitogenic activity of Enterococcus faecalis in a gnotobiotic mouse model of chronic, immune-mediated colitis." Frontiers in immunology 10 (2019): 1420. https://doi.org/10.3389/fimmu.2019.01420
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