Comprehensive Guide to Different Probiotic Strains and What They Do

Understanding the strain-specific nature of probiotics is fundamental to microbiome science and probiotic product development. With thousands of strains identified across various genera, not all probiotics are created equal. Each strain can exhibit unique biological functions, mechanisms of action, and clinical relevance. This article highlights key probiotic strains from human, animal, and environmental origins, explaining their scientifically supported benefits and mechanisms, helping researchers and health professionals choose the most beneficial probiotic strains for further study or development.

Fig. 1 Health benefits probiotic strains. (Creative Biolabs Authorized)Fig.1 Health benefits of probiotics.1

How Many Probiotic Strains Are There?

Thousands of probiotic strains have been isolated, primarily from genera such as Lactobacillus, Bifidobacterium, Saccharomyces, Streptococcus, Bacillus, and Escherichia. Taxonomically, a probiotic is fully defined by genus, species, and strain (e.g., Lactobacillus rhamnosus GG or LGG). The diversity of probiotic strains contributes to a wide range of health effects — but it also requires precise identification and validation.

Human-Origin vs. Environmental Strains

Human strain probiotics, isolated from the human gut or breast milk, are often favored for their ability to colonize the human intestine and modulate immune responses effectively. For instance, Lactobacillus acidophilus DDS-1 has shown superior survival and immunomodulatory activity compared to non-human strains.

Conversely, environmental and dairy-origin strains also deliver benefits despite being transient. Streptococcus thermophilus, commonly found in yogurt, aids lactose digestion and contributes to gut immune balance. Spore-forming Bacillus strains like Bacillus coagulans are resilient to heat and gastric acid, making them effective in food-grade formulations and animal health.

Both types of strains play critical roles. Human strains may better adapt to gut colonization, while non-human strains often enhance gut ecology and microbial diversity.

Mechanisms of Action: How Probiotics Work

Probiotic strains exhibit effects through several mechanistic pathways, Understanding these mechanisms helps in selecting strain-specific probiotics for targeted functional outcomes.

Microbial competition

Inhibit pathogens by occupying adhesion sites and producing bacteriocins.

Short-chain fatty acid (SCFA) production

Inhibit pathogens by occupying adhesion sites and producing bacteriocins.

Gut barrier enhancement

Upregulate tight junction proteins (e.g., ZO-1, occludin) to prevent "leaky gut".

Immune modulation

Increase anti-inflammatory cytokines (e.g., IL-10), reduce pro-inflammatory markers (e.g., TNF-α).

Vitamin biosynthesis

Some Bifidobacterium strains produce B vitamins.

Neurochemical influence

Certain strains affect the gut-brain axis via neurotransmitter modulation.

List of Probiotic Strains and What They Do

Strain Name Origin / Type Key Benefits Mechanisms & Notes
Lactobacillus Strains
L. rhamnosus GG (LGG) Human Gut health, pathogen inhibition, immune resilience Survives gastric transit, adheres to intestinal cells, antimicrobial production
L. acidophilus DDS-1 / NCFM / LA-5 Human Digestion, cholesterol reduction, immune modulation DDS-1 enhances IL-10 expression; acid and bile tolerant
L. plantarum 299v Fermented plant IBS symptom relief, folate production, gut barrier support Enhances tight junctions, produces antioxidants
L. reuteri 17938 Human / Fermented foods Colic reduction, oral and urogenital health Produces reuterin (antimicrobial), modulates inflammation
L. casei Shirota Human Bowel regularity, immune modulation, lactose digestion Used in Yakult, clinically supported for gut health
Bifidobacterium Strains
B. longum subsp. longum 35624 Human IBS symptom relief, microbiota balance, anti-inflammatory Reduces bloating and pain, modulates immune signaling
B. longum subsp. infantis Human (infant gut) Infant microbiota development, gut barrier, immune support Utilizes HMOs, colonizes infant gut, supports IgA
B. breve Human (breast milk) Constipation relief, infection defense, allergy modulation Produces SCFAs, supports bowel movement in infants
B. bifidum Human (colon) Carbohydrate metabolism, mucosal immunity, allergy prevention Enhances barrier function, synergistic with S. thermophilus
B. lactis HN019 / DN-173010 Dairy / Human Digestive regularity, immune enhancement Increases gut transit, boosts NK cell activity
Other Probiotic Strains
Saccharomyces boulardii Yeast Diarrhea prevention, gut inflammation control, immune support Binds bacterial toxins, not affected by antibiotics
Bacillus coagulans Soil-derived spore-former Bloating reduction, immune balance, gut flora support Survives heat & acid, produces lactic acid, antimicrobial actions
Streptococcus thermophilus Dairy Lactose digestion, mild inflammation control Produces lactase, folate, synergistic with Bifidobacterium
Enterococcus faecium SF68 Animal / Human Gut microbial balance, pathogen inhibition (mainly veterinary use) Must be safety-screened for antibiotic resistance
Escherichia coli Nissle 1917 Human Barrier function, immune regulation, pathogen suppression Enhances tight junctions, produces antimicrobials, long history of safe use

Single-Strain vs. Multi-Strain Probiotics

Single-strain probiotics allow targeted application and high-dose delivery of a well-researched strain (e.g., LGG or 35624). These are ideal for clinical trials and mechanistic studies.

Multi-strain formulations aim to cover broader functions – combining strains for digestive, immune, or metabolic benefits. However, care must be taken to ensure synergy and avoid competition. Research shows effects are not always additive, and some blends may dilute individual strain efficacy.

The key is to validate each strain within the formula, with finished-product testing to ensure effectiveness.

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Strain-Specific Benefits and Future Directions

Probiotic functionality depends heavily on the strain-level identity, not just species. This specificity affects everything from gut adhesion and immune signaling to metabolic outputs.

As next-generation sequencing expands, new human and environmental strains are being identified with potential for mood regulation, metabolic support, and disease prevention. Researchers are encouraged to pursue functional genomics and clinical validation of emerging strains.

Creative Biolabs' Probiotic Strain Services

To support researchers and developers in the comprehensive characterization and qualification of probiotic strains, Creative Biolabs provides a wide range of specialized services covering strain identification, functional evaluation, and downstream development. Key services related to probiotic strain development include:

Microbial Characterization & Safety Testing

Strain Functionality & Immune Profiling

Process Development & Analytical Qualification

For detailed information on our services and products, please contact our professional team directly.

FAQs

How do probiotic strains differ in their impact on the gut microbiome?

Probiotic strains have unique metabolic pathways and abilities to interact with specific microbiota. Some strains excel in producing SCFAs, while others may enhance immune function or strengthen gut barrier integrity, depending on their genomic profile.

What is the importance of strain-specific research in probiotic development?

Strain-specific research is critical because each strain can exhibit different biological activities, such as immune modulation or antimicrobial properties. Understanding these differences allows for the selection of the most effective probiotics for specific health applications.

Resources

References

  1. Naeem, Hammad, et al. "Role of probiotics against human cancers, inflammatory diseases, and other complex malignancies." Journal of Food Biochemistry 2024.1 (2024): 6632209. https://doi.org/10.1155/2024/6632209
  2. Sarita, Bhutada, et al. "A comprehensive review of probiotics and human health-current prospective and applications." Frontiers in Microbiology 15 (2025): 1487641. https://doi.org/10.3389/fmicb.2024.1487641
  3. Distributed Under Open Access license CC BY 4.0, without modification.
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